Program, Project, or Expedition Name:
Proteomics and phosphoproteomics analysis of Haematococcus pluvialis: An improved method to generate and interpret proteomics and phosphoproteomics data of a non-model species
Data Link: https://www.ebi.ac.uk/pride/archive/projects/PXD054975
| Institution | LMRCSC, UMCES |
| Principal Investigator | Yantao Li | yantao@umces.edu |
| Funding Agency/Contract # | NOAA Office of Education Educational Partnership Program (NOAA EPP) award NA16SEC4810007 |
| Collection Start Date | 03/01/2024 |
| Objectives of Data Collection Effort | Harvest green stage and red stage Haematococcus pluvialis cultures to have two data sets to test using the improved data analysis method being developed for this paper. |
| Collection End Date | 04/01/2024 |
| Data Collectors Identifying Numbers | N/A |
| Ship or Other Platform Name | N/A |
| Geographic Location [Latitude(s)/longitude(s)] | N/A |
| Units | p-values |
| Data Parameters | Protein expression fold-change |
| Precision | FDR 0.01 |
| Observation Methodology | LC-MS/MS |
| Instrument/Gear Identification of Description | Dionex 3000 RSLC nano-scale liquid chromatograph in tandem with an Orbitrap Exploris 480 mass spectrometer |
| Analysis Methodology | Protein expression analysis and proteome annotation |
| Data Processing/ Reduction Methodology | Excel, Unix, DAVID, Blast2GO, KEGG |
| Explanations of Data Quality Flags | N/A |
| Citations of Relevant Publications and Grey Literature | Ramarui, K., Li, Y. Proteomics and phosphoproteomics analysis of Haematococcus pluvialis: An improved method to generate and interpret proteomics and phosphoproteomics data of a non-model species. J Appl Phycol 36, 3243–3260 (2024). https://doi.org/10.1007/s10811-024-03356-1 |
