{"id":6743,"date":"2026-06-11T17:50:15","date_gmt":"2026-06-11T21:50:15","guid":{"rendered":"https:\/\/wwwcp.umes.edu\/lmrcsc\/?page_id=6743"},"modified":"2026-06-11T17:50:16","modified_gmt":"2026-06-11T21:50:16","slug":"proteomics-and-phosphoproteomics-analysis-of-haematococcus-pluvialis","status":"publish","type":"page","link":"https:\/\/wwwcp.umes.edu\/lmrcsc\/proteomics-and-phosphoproteomics-analysis-of-haematococcus-pluvialis\/","title":{"rendered":"Proteomics and phosphoproteomics analysis of Haematococcus pluvialis"},"content":{"rendered":"\n

Program, Project, or Expedition Name:<\/strong><\/p>\n\n\n\n

Proteomics and phosphoproteomics analysis of Haematococcus pluvialis<\/em>: An improved method to generate and interpret proteomics and phosphoproteomics data of a non-model species<\/p>\n\n\n\n

Data Link:\u00a0https:\/\/www.ebi.ac.uk\/pride\/archive\/projects\/PXD054975<\/a><\/p>\n\n\n\n

\n\n\n\n
Institution<\/strong><\/td>LMRCSC, UMCES<\/td><\/tr>
Principal Investigator<\/strong><\/td>Yantao Li | yantao@umces.edu<\/a><\/td><\/tr>
Funding Agency\/Contract #<\/strong><\/td>NOAA Office of Education Educational Partnership Program (NOAA EPP) award NA16SEC4810007<\/td><\/tr>
Collection Start Date<\/strong><\/td>03\/01\/2024<\/td><\/tr>
Objectives of Data Collection Effort<\/strong><\/td>Harvest green stage and red stage Haematococcus pluvialis cultures to have two data sets to test using the improved data analysis method being developed for this paper.<\/td><\/tr>
Collection End Date<\/strong><\/td>04\/01\/2024<\/td><\/tr>
Data Collectors Identifying Numbers<\/strong><\/td>N\/A<\/td><\/tr>
Ship or Other Platform Name<\/strong><\/td>N\/A<\/td><\/tr>
Geographic Location [Latitude(s)\/longitude(s)]<\/strong><\/td>N\/A<\/td><\/tr>
Units<\/strong><\/td>p-values<\/td><\/tr>
Data Parameters<\/strong><\/td>Protein expression fold-change<\/td><\/tr>
Precision<\/strong><\/td>FDR 0.01<\/td><\/tr>
Observation Methodology<\/strong><\/td>LC-MS\/MS<\/td><\/tr>
Instrument\/Gear  Identification of Description<\/strong><\/td>Dionex 3000 RSLC nano-scale liquid chromatograph in tandem with an Orbitrap Exploris 480 mass spectrometer<\/td><\/tr>
Analysis Methodology<\/strong><\/td>Protein expression analysis and proteome annotation<\/td><\/tr>
Data Processing\/<\/strong> Reduction Methodology<\/strong><\/td>Excel, Unix, DAVID, Blast2GO, KEGG<\/td><\/tr>
Explanations of Data Quality Flags<\/strong><\/td>N\/A<\/td><\/tr>
Citations of Relevant Publications and Grey Literature<\/strong><\/td>Ramarui, K., Li, Y. Proteomics and phosphoproteomics analysis of Haematococcus pluvialis: An improved method to generate and interpret proteomics and phosphoproteomics data of a non-model species. J Appl Phycol 36, 3243\u20133260 (2024). https:\/\/doi.org\/10.1007\/s10811-024-03356-1<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n","protected":false},"excerpt":{"rendered":"

Program, Project, or Expedition Name: Proteomics and phosphoproteomics analysis of Haematococcus pluvialis: An improved method to generate and interpret proteomics and phosphoproteomics data of a non-model species Data Link:\u00a0https:\/\/www.ebi.ac.uk\/pride\/archive\/projects\/PXD054975 Institution LMRCSC, UMCES Principal Investigator Yantao Li | yantao@umces.edu Funding Agency\/Contract # NOAA Office of Education Educational Partnership Program (NOAA EPP) award NA16SEC4810007 Collection Start Date…Read more Proteomics and phosphoproteomics analysis of Haematococcus pluvialis<\/span><\/a><\/span><\/p>\n","protected":false},"author":103,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","footnotes":""},"folder":[],"class_list":["post-6743","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/pages\/6743","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/users\/103"}],"replies":[{"embeddable":true,"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/comments?post=6743"}],"version-history":[{"count":0,"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/pages\/6743\/revisions"}],"wp:attachment":[{"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/media?parent=6743"}],"wp:term":[{"taxonomy":"folder","embeddable":true,"href":"https:\/\/wwwcp.umes.edu\/lmrcsc\/wp-json\/wp\/v2\/folder?post=6743"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}